from TRESPASS (1970):

The Knife (Genesis Live version);

 

from NURSERY CRIME (1971): 
The Return Of The Giant Hoogweed;

Musical Box (closing section at the end of The Lamb..); 
For Absent Friends;

 

from FOXTROT (1972):

Can-Utility & The Coastliners;
Watcher Of The Skies;
Supper's Ready (Second's Out version);

Horizons;

 

from SELLING ENGLAND BY THE POUND (1973):

Firth Of Fifth (Second's Out version);

Cinema Show (Second's Out version);

I Know What I Like (Second's Out version);
The Battle of Epping Forest;

 

from THE LAMB LIES DOWN ON BROADWAY (1974):

The Lamb;

Carpet Crawlers;

Liliwhite Lilith;

In The Cage;

Slippermen (in a medley with Cinema Show);
The Lamia;
Back in New York City; 
Hairless Hearth;

         

from A TRICK OF THE TAIL (1976):

Dance On A Volcano;
Entangled (instrumental part);

Squonk;

Robbery Assault & Battery;

Los Endos;

 

from WIND & WUTHERING (1976):

In That Quiet Earth;
Afterglow;
Blood On The Rooftops (the first acoustic guitar part);
Wot Gorilla;

 

from AND THEN THERE WERE THREE (1978):
Down & Out;

Undertow;
Follow You, Follow Me;

 

from DUKE (1980):

Turn It On Again;

Behind The Lines;

Guide Vocal;

 

from ABACAB (1981):

Dodo/Lurker;

Man On The Corner;

Abacab;

 

from GENESIS (1983):

Mama;

Home By The Sea I+II;

 

from INVISIBLE TOUCH (1986):

Invisible Touch;

Land Of Confusion;

Dominio I+II;

Throwing It All Away;

 

from WE CAN'T DANCE (1991):

No Son Of Mine;

Driving The Last Spike;

Jesus He Knows Me;
Hold On My Heart;

Fading Lights;

 

from CALLING ALL STATIONS (1997):

Congo;

Calling All Station;

Not About Us (acoustic version);